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Table 3 Genomic loci for hair phenotypes and their observed overlaps with our hair follicle eQTLs

From: Mapping of cis-acting expression quantitative trait loci in human scalp hair follicles

Summary

Hair shape

Hair color

AGA

Sample size

16,763

290,891

145,000a

# Genomic loci

12

122

98

# Lead SNPs

23

124

185

# Ind.Sig.SNPs

63

130

245

# Candidate SNPs

1424

6658

11,821

# GWAS SNPs

704

134

335

# Mapped genes

69

204

161

# Total input SNPs

706

137

387

# Skipped input SNPs

2

3

36

Overlapping eGenes with mapped genes

PADI3

BCAS1, C17orf70, CHMP4C, MRPL39, PADI3, RYBP

ATP2B4

Overlapping loci

2

2

Overlapping Chr.Loc.

chr1p36.13

chr1p36.13

chr4q21.21

chr17q25.3

 

Mapped genes

PADI3, PADI4

PADI3, PADI4

FRAS1

NPLOC4

 

eGenes

PADI3

PADI3

ANXA3

TSPAN10

 
  1. AGA androgenetic alopecia, Ind.Sig.SNPs independent significant SNPs, Chr.Loc. chromosome location
  2. aApproximated sample size, as lead SNPs were collected from different studies