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Table 3 Genomic loci for hair phenotypes and their observed overlaps with our hair follicle eQTLs

From: Mapping of cis-acting expression quantitative trait loci in human scalp hair follicles

Summary

Hair shape

Hair color

AGA

Sample size

16,763

290,891

145,000a

# Genomic loci

12

122

98

# Lead SNPs

23

124

185

# Ind.Sig.SNPs

63

130

245

# Candidate SNPs

1424

6658

11,821

# GWAS SNPs

704

134

335

# Mapped genes

69

204

161

# Total input SNPs

706

137

387

# Skipped input SNPs

2

3

36

Overlapping eGenes with mapped genes

PADI3

BCAS1, C17orf70, CHMP4C, MRPL39, PADI3, RYBP

ATP2B4

Overlapping loci

2

2

–

Overlapping Chr.Loc.

chr1p36.13

chr1p36.13

–

chr4q21.21

chr17q25.3

 

Mapped genes

PADI3, PADI4

PADI3, PADI4

–

FRAS1

NPLOC4

 

eGenes

PADI3

PADI3

–

ANXA3

TSPAN10

 
  1. AGA androgenetic alopecia, Ind.Sig.SNPs independent significant SNPs, Chr.Loc. chromosome location
  2. aApproximated sample size, as lead SNPs were collected from different studies