Table 3 Results of TDT and PDT by genotypig tag SNPs in SORCS3
rs number | allele | Trans* | Not trans** | TDT P value (corrected) | PDT P value (corrected) |
|---|---|---|---|---|---|
rs768731 | C | 47 | 35 | 0.1843 (0.98) | 0.2878 (0.99) |
rs790640 | C | 21 | 37 | 0.03446 (0.50) | 0.05183 (0.65) |
rs790726 | G | 47 | 31 | 0.06905 (0.76) | 0.2346 (0.99) |
rs791123 | G | 71 | 50 | 0.05563 (0.68) | 0.1291 (0.93) |
rs971527 | G | 44 | 48 | 0.6766 (1) | 0.5258 (1) |
rs1472050 | T | 42 | 43 | 0.9136 (1) | 0.9178 (1) |
rs1490173 | G | 60 | 47 | 0.2083 (0.99) | 0.2522 (0.99) |
rs1565415 | G | 50 | 50 | 1 (1) | 0.9164 (1) |
rs1953071 | C | 52 | 45 | 0.4771 (1) | 0.3538 (0.99) |
rs2491388 | A | 38 | 34 | 0.6373 (1) | 0.5675 (1) |
rs3011669 | A | 35 | 49 | 0.1257 (0.93) | 0.2793 (0.99) |
rs4532962 | T | 51 | 55 | 0.6976 (1) | 0.6633 (1) |
rs7084834 | C | 19 | 27 | 0.237 (0.99) | 0.1829 (0.98) |
rs7096635 | T | 53 | 37 | 0.09083 (0.85) | 0.05368 (0.66) |
rs7895087 | G | 67 | 29 | 8.42E-05 (0.0017) | 0.0003507 (0.007) |
rs9943297 | G | 44 | 60 | 0.1159 (0.91) | 0.2017 (0.98) |
rs10509784 | C | 16 | 39 | 0.001635 (0.03) | 0.007646 (0.14) |
rs10509785 | C | 40 | 48 | 0.3934 (1) | 0.4579 (1) |
rs10884049 | G | 62 | 45 | 0.09957 (0.88) | 0.1014 (0.88) |
rs11192320 | G | 41 | 18 | 0.002409 (0.047) | 0.007646 (0.14) |